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Profile for J Clark Lagarias

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jclagarias@ucdavis.edu

J Clark's organizations

Journal article search

  • Nathan C Rockwell, J Clark Lagarias. Flexible mapping of homology onto structure with homolmapper.. BMC bioinformatics, Volume 8, : pp. 123.
  • Nathan C Rockwell, Yi-Shin Su, J Clark Lagarias. Phytochrome structure and signaling mechanisms.. Annual review of plant biology, Volume 57, : pp. 837-58.
  • Amanda C Kohler, David D Gae, Michael A Richley, Stefan Stoll, Alexander Gunn, Sunghyuk Lim, Shelley S Martin, Tzanko I Doukov, R David Britt, James B Ames, J Clark Lagarias, Andrew J Fisher. Structural Basis for Hydration Dynamics in Radical Stabilization of Bilin Reductase Mutants.. Biochemistry, , : .
  • Lixia Shang, Nathan C Rockwell, Shelley S Martin, J Clark Lagarias. Biliverdin Amides Reveal Roles for Propionate Side Chains in Bilin Reductase Recognition and in Holophytochrome Assembly and Photoconversion.. Biochemistry, , : .
  • Nathan C Rockwell, J Clark Lagarias. A Brief History of Phytochromes.. Chemphyschem : a European journal of chemical physics and physical chemistry, , : .
  • Yoshinori Hagiwara, Masakazu Sugishima, Htoi Khawn, Hideki Kinoshita, Katsuhiko Inomata, Lixia Shang, J Clark Lagarias, Yasuhiro Takahashi, Keiichi Fukuyama. Structural insights into vinyl reduction regiospecificity of phycocyanobilin:ferredoxin oxidoreductase (PcyA).. The Journal of biological chemistry, , : .
  • Katelyn M Spillane, Jyotishman Dasgupta, J Clark Lagarias, Richard A Mathies. Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis.. Journal of the American Chemical Society, Volume 131, Issue 39: pp. 13946-8.
  • Nathan C Rockwell, Lixia Shang, Shelley S Martin, J Clark Lagarias. Distinct classes of red/far-red photochemistry within the phytochrome superfamily.. Proceedings of the National Academy of Sciences of the United States of America, Volume 106, Issue 15: pp. 6123-7.
  • Stefan Stoll, Alexander Gunn, Marcin Brynda, Wesley Sughrue, Amanda C Kohler, Andrew Ozarowski, Andrew J Fisher, J Clark Lagarias, R David Britt. Structure of the biliverdin radical intermediate in phycocyanobilin:ferredoxin oxidoreductase identified by high-field EPR and DFT.. Journal of the American Chemical Society, Volume 131, Issue 5: pp. 1986-95.
  • Jyotishman Dasgupta, Renee R Frontiera, Keenan C Taylor, J Clark Lagarias, Richard A Mathies. Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy.. Proceedings of the National Academy of Sciences of the United States of America, Volume 106, Issue 6: pp. 1784-9.
  • Wei Hu, Yi-Shin Su, J Clark Lagarias. A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks.. Molecular plant, Volume 2, Issue 1: pp. 166-82.
  • Nathan C Rockwell, Stephanie Lane Njuguna, Laurel Roberts, Elenor Castillo, Victoria L Parson, Sunshine Dwojak, J Clark Lagarias, Susan C Spiller. A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus.. Biochemistry, Volume 47, Issue 27: pp. 7304-16.
  • Yi-shin Su, J Clark Lagarias. Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants.. The Plant cell, Volume 19, Issue 7: pp. 2124-39.
  • Shih-Long Tu, Nathan C Rockwell, J Clark Lagarias, Andrew J Fisher. Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements.. Biochemistry, Volume 46, Issue 6: pp. 1484-94.
  • Abigail E Miller, Amanda J Fischer, Ted Laurence, Christopher W Hollars, Richard J Saykally, J Clark Lagarias, Thomas Huser. Single-molecule dynamics of phytochrome-bound fluorophores probed by fluorescence correlation spectroscopy.. Proceedings of the National Academy of Sciences of the United States of America, Volume 103, Issue 30: pp. 11136-41.
  • Shih-Long Tu, Wesley Sughrue, R David Britt, J Clark Lagarias. A conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin:ferredoxin oxidoreductase.. The Journal of biological chemistry, Volume 281, Issue 6: pp. 3127-36.
  • Nathan C Rockwell, J Clark Lagarias. The structure of phytochrome: a picture is worth a thousand spectra.. The Plant cell, Volume 18, Issue 1: pp. 4-14.
  • Amanda J Fischer, Nathan C Rockwell, Abigail Y Jang, Lauren A Ernst, Alan S Waggoner, Yong Duan, Hongxing Lei, J Clark Lagarias. Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes.. Biochemistry, Volume 44, Issue 46: pp. 15203-15.
  • Amanda J Fischer, J Clark Lagarias. Harnessing phytochrome's glowing potential.. Proceedings of the National Academy of Sciences of the United States of America, Volume 101, Issue 50: pp. 17334-9.
  • Shih-Long Tu, Alexander Gunn, Michael D Toney, R David Britt, J Clark Lagarias. Biliverdin reduction by cyanobacterial phycocyanobilin:ferredoxin oxidoreductase (PcyA) proceeds via linear tetrapyrrole radical intermediates.. Journal of the American Chemical Society, Volume 126, Issue 28: pp. 8682-93.
  • Chitose Kami, Keiko Mukougawa, Takuya Muramoto, Akiho Yokota, Tomoko Shinomura, J Clark Lagarias, Takayuki Kohchi. Complementation of phytochrome chromophore-deficient Arabidopsis by expression of phycocyanobilin:ferredoxin oxidoreductase.. Proceedings of the National Academy of Sciences of the United States of America, Volume 101, Issue 4: pp. 1099-104.
  • Kazuki Terauchi, Beronda L Montgomery, Arthur R Grossman, J Clark Lagarias, David M Kehoe. RcaE is a complementary chromatic adaptation photoreceptor required for green and red light responsiveness.. Molecular microbiology, Volume 51, Issue 2: pp. 567-77.
  • Keara A Franklin, Philip J Linley, Beronda L Montgomery, J Clark Lagarias, Brian Thomas, Stephen D Jackson, Matthew J Terry. Misregulation of tetrapyrrole biosynthesis in transgenic tobacco seedlings expressing mammalian biliverdin reductase.. The Plant journal : for cell and molecular biology, Volume 35, Issue 6: pp. 717-28.
  • Nicole Frankenberg, J Clark Lagarias. Phycocyanobilin:ferredoxin oxidoreductase of Anabaena sp. PCC 7120. Biochemical and spectroscopic.. The Journal of biological chemistry, Volume 278, Issue 11: pp. 9219-26.
  • This personal profile was last updated over 2 years ago

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